def functionXMLout(_strXMLin, _strXMLout):
"""
This is an example of XMLout function ... it prints only the name of the file created
@param _srXMLin: The XML string used to launch the job
@type _strXMLin: python string with the input XML
@param _strXMLout: The XML string retrieved job
@type _strXMLout: python string with the output XML
@return: None
"""
xsDataInputGridScreening = XSDataInputGridScreening.parseString(_strXMLin)
strImagePath = xsDataInputGridScreening.getImageFile().getPath().getValue()
EDVerbose.screen("Successful processing of image %s" % strImagePath)
strResultText = "%40s " % os.path.basename(strImagePath)
xsDataResultGridScreening = XSDataResultGridScreening.parseString(_strXMLout)
fileNameParameters = xsDataResultGridScreening.getFileNameParameters()
if fileNameParameters is None:
strResultText += "%6s%10s%10s%6s" % ("NA", "NA", "NA","NA")
else:
strResultText += "%6s%10s%10s%6s" % (
fileNameParameters.getScanId1().getValue(),
fileNameParameters.getMotorPosition1().getValue(),
fileNameParameters.getMotorPosition2().getValue(),
fileNameParameters.getScanId2().getValue(),
)
imageQualityIndicators = xsDataResultGridScreening.getImageQualityIndicators()
if imageQualityIndicators is None:
strResultText += "%6s%6s%6s%6s%10s" % ("NA", "NA", "NA","NA", "NA")
else:
strMethod1Res = "%6s" % "NA"
if imageQualityIndicators.getMethod1Res():
strMethod1Res = "%6.1f" % imageQualityIndicators.getMethod1Res().getValue()
strMethod2Res = "%6s" % "NA"
if imageQualityIndicators.getMethod2Res():
strMethod2Res = "%6.1f" % imageQualityIndicators.getMethod2Res().getValue()
strSpotTotal = "%6s" % "NA"
if imageQualityIndicators.getSpotTotal():
strSpotTotal = "%6d" % imageQualityIndicators.getSpotTotal().getValue()
strGoodBraggCandidates = "%6s" % "NA"
if imageQualityIndicators.getGoodBraggCandidates():
strGoodBraggCandidates = "%6d" % imageQualityIndicators.getGoodBraggCandidates().getValue()
strTotalIntegratedSignal = "%10s" % "NA"
if imageQualityIndicators.getTotalIntegratedSignal():
strTotalIntegratedSignal = "%10.0f" % imageQualityIndicators.getTotalIntegratedSignal().getValue()
strResultText += strMethod1Res + strMethod2Res + strSpotTotal + strGoodBraggCandidates + strTotalIntegratedSignal
if xsDataResultGridScreening.getMosaicity() is None:
strResultText += "%6s" % "NA"
else:
strResultText += "%6.1f" % xsDataResultGridScreening.getMosaicity().getValue()
if xsDataResultGridScreening.getRankingResolution() is None:
strResultText += "%6s" % "NA"
else:
strResultText += "%6.1f" % xsDataResultGridScreening.getRankingResolution().getValue()
strResultText += " " + xsDataResultGridScreening.getComment().getValue()
writeToResultFile(strResultText)
def finallyProcess(self, _edObject=None):
EDPluginControl.finallyProcess(self)
self.DEBUG("EDPluginControlGridScreeningv1_0.finallyProcess")
# Synchronise if necessary
if self.edPluginISPyBStoreImageQualityIndicators is not None:
self.edPluginISPyBStoreImageQualityIndicators.synchronize()
# Build up the output object
strComment = ""
xsDataResultGridScreening = XSDataResultGridScreening()
if self.xsDataGridScreeningFileNameParameters is not None:
xsDataResultGridScreening.setFileNameParameters(self.xsDataGridScreeningFileNameParameters)
if self.xsDataImageQualityIndicators is None:
strComment = "No image quality indicators"
else:
xsDataResultGridScreening.setImageQualityIndicators(self.xsDataImageQualityIndicators)
if self.xsDataImageQualityIndicators.getIceRings() is not None:
if self.xsDataImageQualityIndicators.getIceRings().getValue() > 1:
strComment = "Ice rings detected"
if self.xsDataIndexingResult is None:
if strComment == "":
strComment = "No indexing result"
else:
strComment += ", no indexing result"
else:
xsDataSelectedSolution = self.xsDataIndexingResult.getSelectedSolution()
xsDataResultGridScreening.setMosaicity(xsDataSelectedSolution.getCrystal().getMosaicity())
if self.xsDataStrategyResult is None:
if strComment == "":
strComment = "No strategy result"
else:
strComment += ", no strategy result"
else:
xsDataCollectionPlan = self.xsDataStrategyResult.getCollectionPlan()[0]
xsDataStrategySummary = xsDataCollectionPlan.getStrategySummary()
xsDataResultGridScreening.setRankingResolution(xsDataStrategySummary.getRankingResolution())
xsDataResultGridScreening.setResultIntegration(self.xsDataGridScreeningResultIntegration)
xsDataResultGridScreening.setComment(XSDataString(strComment))
if self.iImageQualityIndicatorsId is not None:
xsDataResultGridScreening.setImageQualityIndicatorsId(XSDataInteger(self.iImageQualityIndicatorsId))
# print xsDataResultGridScreening.marshal()
self.setDataOutput(xsDataResultGridScreening)
def finallyProcess(self, _edObject=None):
EDPluginControl.finallyProcess(self)
self.DEBUG("EDPluginControlGridScreeningv1_0.finallyProcess")
# Synchronise if necessary
if self.edPluginISPyBStoreImageQualityIndicators is not None:
self.edPluginISPyBStoreImageQualityIndicators.synchronize()
# Build up the output object
strComment = ""
xsDataResultGridScreening = XSDataResultGridScreening()
if self.xsDataGridScreeningFileNameParameters is not None:
xsDataResultGridScreening.setFileNameParameters(
self.xsDataGridScreeningFileNameParameters)
if self.xsDataImageQualityIndicators is None:
strComment = "No image quality indicators"
else:
xsDataResultGridScreening.setImageQualityIndicators(
self.xsDataImageQualityIndicators)
if self.xsDataImageQualityIndicators.getIceRings().getValue() > 1:
strComment = "Ice rings detected"
if self.xsDataIndexingResult is None:
if strComment == "":
strComment = "No indexing result"
else:
strComment += ", no indexing result"
else:
xsDataSelectedSolution = self.xsDataIndexingResult.getSelectedSolution(
)
xsDataResultGridScreening.setMosaicity(
xsDataSelectedSolution.getCrystal().getMosaicity())
if self.xsDataStrategyResult is None:
if strComment == "":
strComment = "No strategy result"
else:
strComment += ", no strategy result"
else:
xsDataCollectionPlan = self.xsDataStrategyResult.getCollectionPlan(
)[0]
xsDataStrategySummary = xsDataCollectionPlan.getStrategySummary(
)
xsDataResultGridScreening.setRankingResolution(
xsDataStrategySummary.getRankingResolution())
xsDataResultGridScreening.setResultIntegration(
self.xsDataGridScreeningResultIntegration)
xsDataResultGridScreening.setComment(XSDataString(strComment))
if self.iImageQualityIndicatorsId is not None:
xsDataResultGridScreening.setImageQualityIndicatorsId(
XSDataInteger(self.iImageQualityIndicatorsId))
#print xsDataResultGridScreening.marshal()
self.setDataOutput(xsDataResultGridScreening)