Example #1
0
class SimpleGzipInfoTestCase(InfoMixin, unittest.TestCase):
    seq_file = data_path('input2.fasta.gz')
Example #2
0
class SimpleBzip2InfoTestCase(InfoMixin, unittest.TestCase):
    seq_file = data_path('input2.fasta.bz2')
Example #3
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class MultithreadedInfoTestCase(InfoMixin, unittest.TestCase):
    seq_file = data_path('input2.fasta')
    threads = 2
Example #4
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class GzipExtractIdsTestCase(ExtractIdsMixin, unittest.TestCase):
    seq_file = data_path('input2.fasta.gz')
Example #5
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class Bz2ExtractIdsTestCase(ExtractIdsMixin, unittest.TestCase):
    seq_file = data_path('input2.fasta.bz2')
Example #6
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class SimpleExtractIdsTestCase(ExtractIdsMixin, unittest.TestCase):
    seq_file = data_path('input2.fasta')
Example #7
0
class MogrifyGzipInputTestCase(CommandLineTestMixIn,
                               test_convert.GzipInputConvertTestCase):
    command = 'mogrify {input}'
    expected_path = data_path('output2.fasta')
    out_suffix = 'fasta.gz'