Python min_ungap_length_discard Examples

Example #1

File: test_transform.py Project: pansapiens/seqmagick

 def test_partial(self):
     result = transform.min_ungap_length_discard(self.sequences, 4)
     self.assertEqual([self.sequences[1], self.sequences[3]], list(result))

Example #2

File: test_transform.py Project: pansapiens/seqmagick

 def test_none_pass(self):
     result = list(transform.min_ungap_length_discard(self.sequences, 8))
     self.assertEqual([], result)

Example #3

File: test_transform.py Project: pansapiens/seqmagick

 def test_all_pass(self):
     result = list(transform.min_ungap_length_discard(self.sequences, 0))
     self.assertEqual(self.sequences, result)

Example #4

File: test_transform.py Project: yimsea/seqmagick

 def test_partial(self):
     result = transform.min_ungap_length_discard(self.sequences, 4)
     self.assertEqual([self.sequences[1], self.sequences[3]], list(result))

Example #5

File: test_transform.py Project: yimsea/seqmagick

 def test_all_pass(self):
     result = list(transform.min_ungap_length_discard(self.sequences, 0))
     self.assertEqual(self.sequences, result)

Example #6

File: test_transform.py Project: yimsea/seqmagick

 def test_none_pass(self):
     result = list(transform.min_ungap_length_discard(self.sequences, 8))
     self.assertEqual([], result)

Example #7

File: test_transform.py Project: fhcrc/seqmagick

 def test_partial(self):
     result = transform.min_ungap_length_discard(self.sequences, 4)
     self.assertEqual(
         [self.sequences[1].seq, self.sequences[3].seq],
         [seq.seq for seq in result])

Example #8

File: test_transform.py Project: peterjc/seqmagick

 def test_partial(self):
     result = transform.min_ungap_length_discard(self.sequences, 4)
     self.assertEqual([self.sequences[1].seq, self.sequences[3].seq],
                      [seq.seq for seq in result])