def __init__(self):
PipelineSoftwareBase.__init__(self, 'script_recover_fragments')
def __init__(self):
PipelineSoftwareBase.__init__(self, 'cutadapt_pe')
def __init__(self):
PipelineSoftwareBase.__init__(self, 'picard_MarkDuplicates')
def __init__(self):
PipelineSoftwareBase.__init__(self, 'IGVTools')
def __init__(self):
PipelineSoftwareBase.__init__(self, 'MACS2')
def __init__(self):
PipelineSoftwareBase.__init__(self, 'bedtools')
def __init__(self):
PipelineSoftwareBase.__init__(self, 'samtools_flagstat')
def __init__(self):
PipelineSoftwareBase.__init__(self, 'FSeq')
def __init__(self):
PipelineSoftwareBase.__init__(self, 'samtools_view')
def __init__(self):
PipelineSoftwareBase.__init__(self, 'bwa_sampe')
def __init__(self):
PipelineSoftwareBase.__init__(self, 'bwa_aln')
def __init__(self):
PipelineSoftwareBase.__init__(self, 'fastqc')
def __init__(self, name):
PipelineSoftwareBase.__init__(self, name)