Esempi in Python per Nexus.siblingSet

Esempio n. 1

File: snrNewEndo.py Progetto: cgreer/ResearchScripts

def updateSimilarSiblings(oFN, oFF, frameLength):

    dataNX = Nexus(oFN, oFF)
    dataNX.load(['sequence', 'siblingSet'])
    oID_sequence = dataNX.createMap('id', 'sequence')
    consolidatedSets = getSimilarORNASets(oID_sequence, frameLength)

    for cSet in consolidatedSets:
        for oID in cSet:
            dataNX.id = oID
            dataNX.siblingSet = list(cSet)

    dataNX.save()

Esempio n. 2

def updateSimilarSiblings(oFN, oFF, frameLength):

    dataNX = Nexus(oFN, oFF)
    dataNX.load(['sequence', 'siblingSet'])
    oID_sequence = dataNX.createMap('id', 'sequence')
    consolidatedSets = getSimilarORNASets(oID_sequence, frameLength)

    for cSet in consolidatedSets:
        for oID in cSet:
            dataNX.id = oID
            dataNX.siblingSet = list(cSet)

    dataNX.save()