Python benchmark_fish_scrna示例

示例#1

def test_fish_rna(save_path):
    gene_dataset_fish = SmfishDataset(save_path)
    gene_dataset_seq = CortexDataset(save_path=save_path,
                                     genes_fish=gene_dataset_fish.gene_names,
                                     genes_to_keep=[],
                                     additional_genes=50)
    benchmark_fish_scrna(gene_dataset_seq, gene_dataset_fish)

示例#2

文件： test_scvi.py 项目： yunchen-yang/scVI

def test_fish_rna(save_path):
    gene_dataset_fish = SmfishDataset(save_path)
    gene_dataset_seq = CortexDataset(
        save_path=save_path,
        genes_to_keep=gene_dataset_fish.gene_names,
        total_genes=gene_dataset_fish.nb_genes + 50)
    benchmark_fish_scrna(gene_dataset_seq, gene_dataset_fish)