fp.write('\n')
fp.close()
print "Loading json with mongoimport"
# Restart insert time
result.documentInsertStart = time.time()
loadres = os.system("mongoimport --host " + mongoHost.rstrip('/').replace("mongodb://","") + " --db " + databaseName + " --collection " + collectionName + " --file " + mimpfile)
os.remove(mimpfile)
else:
print "Individual document inserting starting"
# Insert each document with SNP and loci data
for v in documents.iteritems():
mongoCollection.insert(v[1])
# Log end time
result.documentInsertEnd = time.time()
result.calculate()
print result.toTerm()
resultsFile.write(result.toString() + '\n')
if remote:
try:
print "Sending to GDocs..."
gs.login()
ws.append_row(result.stringArr())
except:
print "Unable to send to GDocs, continuing..."
if createIndexes:
result = Result()
result.method = "Mongo-Idx"
result.tag = tag
