createDbCursor.close()
# Dictionaries and arrays for SQL and MongoDB queries
snpInserts = {} # Dictionary for rsid/insert for SNP data
lociInserts = [] # Array for loci insert queries
rsidList = {} # Dictionary of RSIDs that will also hold the
# primary key for each SNP in SQL
# Load each chromosome into database
for curChr in chromosomes:
result = Result()
result.method = "pgsql"
result.tag = tag
print "Chromosome " + str(curChr)
result.chromosome = str(curChr)
# Set file paths for current chromosome
curSnpFilePath = snpFilePath.format(curChr)
curLociFilePath = lociFilePath.format(curChr)
if len(path) > 0:
curSnpFilePath = path.rstrip('\\').rstrip('/') + '\\' + curSnpFilePath
curLociFilePath = path.rstrip('\\').rstrip('/') + '\\' + curLociFilePath
# Clear dictionaries for loading multiple chromosomes
snpInserts.clear()
lociInserts = []
rsidList.clear()
# Print status and flush stdout for nohup
