if args.start is not None:
start = args.start
if args.indexes is not None:
createIndexes = args.indexes
if args.queries is not None:
runQueries = args.queries
# Open results file and print header
resultsFileName = 'results-pgsql'
if resultsFileName != "":
resultsFileName += '-' + tag
resultsFileName += '.txt'
resultsFile = open(resultsFileName, 'w')
resultsFile.write(scriptVersion + '\n')
result = Result()
resultsFile.write(result.toHeader() + '\n')
# Data files
snpFilePath = 'snpData-chr{0}.txt'
lociFilePath = 'lociData-chr{0}.txt'
# Chromosome list
chromosomes = ["21"] # dev list
# If not in dev mode, iterate through all chromosomes
if dev is False:
chromosomes = ["1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","X","Y","MT"] # complete list
if start != "1": # Allow restart from anywhere in chromosome list, sequentially as ordered above
startList = []
hitMin = False
for cur in chromosomes:
